PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.302570.1
Common NameCsa_5G157230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 230aa    MW: 26388 Da    PI: 9.881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.302570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1182141355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR+++ + ++ Lr+llP  +       + +++K s  +   ++v+YI+++q
  Cucsa.302570.1  82 IIHRDVERQRRQEMSTLYAALRSLLPVEYlkvkligASSNGKRSICDHMHETVKYIQHMQ 141
                     5699***********************777*****************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1277158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-778145No hitNo description
PROSITE profilePS5088812.18979140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1182159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-883141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-485146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDLDCIQSPF PFDQVDELFP LPSLSPIHLS VADHPPLIAS INNTNRNISE KPKKGRRRKS  60
PNTSADIEDE NPNPNEHKKK KIIHRDVERQ RRQEMSTLYA ALRSLLPVEY LKVKLIGASS  120
NGKRSICDHM HETVKYIQHM QTKIQMLRNK RDELKKNIED GEDSRNITTI ETLNSSKRDS  180
VLVMPRSCGG VQILLDTATH HRLPLSNLIK FLITQNLQII SCHSTRKNDX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6558520.0KM655852.1 Cucumis sativus bHLH transcription factor (Csa5G157230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295841.11e-158transcription factor bHLH118-like
TrEMBLA0A0A0KMQ41e-159A0A0A0KMQ4_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-21bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]